J3_7ZP8_004

3D structure

PDB id

7ZP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S E. coli ribosome with a stalled filamin domain 5 nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

7ZP8|1|b|U|686, 7ZP8|1|b|A|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7ZP8_004 not in the Motif Atlas

Homologous match to J3_8VTW_001

Geometric discrepancy: 0.1786

The information below is about J3_8VTW_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_39238.5

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

7ZP8|1|b|U|683
7ZP8|1|b|G|684
7ZP8|1|b|A|685
7ZP8|1|b|U|686
7ZP8|1|b|C|687
7ZP8|1|b|U|688
7ZP8|1|b|A|689
*
7ZP8|1|b|U|773
7ZP8|1|b|G|774
7ZP8|1|b|G|775
*
7ZP8|1|b|C|791
7ZP8|1|b|A|792
7ZP8|1|b|A|793
7ZP8|1|b|A|794

Current chains

Chain b

23S rRNA

Nearby chains

Chain 6

50S ribosomal protein L34

Chain c

50S ribosomal protein L2