J3_7ZP8_015

3D structure

PDB id

7ZP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S E. coli ribosome with a stalled filamin domain 5 nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

UCGACCC*GGAAA*UA

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7ZP8_015 not in the Motif Atlas

Homologous match to J3_9DFE_012

Geometric discrepancy: 0.5906

The information below is about J3_9DFE_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_94309.1

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW-F

Number of instances in this motif group

9

Unit IDs

7ZP8|1|b|U|1344
7ZP8|1|b|C|1345
7ZP8|1|b|G|1346
7ZP8|1|b|A|1347
7ZP8|1|b|C|1348
7ZP8|1|b|C|1349
7ZP8|1|b|C|1350
*
7ZP8|1|b|G|1381
7ZP8|1|b|G|1382
7ZP8|1|b|A|1383
7ZP8|1|b|A|1384
7ZP8|1|b|A|1385
*
7ZP8|1|b|U|1402
7ZP8|1|b|A|1403

Current chains

Chain b

23S rRNA

Nearby chains

Chain t

50S ribosomal protein L23