J3_7ZPQ_005
3D structure
- PDB id
- 7ZPQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the RQT-bound 80S ribosome from S. cerevisiae (C1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.47 Å
Loop
- Sequence
- CUA*UUACG*CAAAG
- Length
- 13 nucleotides
- Bulged bases
- 7ZPQ|1|2|A|1093
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7ZPQ_005 not in the Motif Atlas
- Homologous match to J3_4V88_034
- Geometric discrepancy: 0.1181
- The information below is about J3_4V88_034
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_23622.1
- Basepair signature
- cWW-tWW-tWW-F-cWW-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
7ZPQ|1|2|C|1037
7ZPQ|1|2|U|1038
7ZPQ|1|2|A|1039
*
7ZPQ|1|2|U|1079
7ZPQ|1|2|U|1080
7ZPQ|1|2|A|1081
7ZPQ|1|2|C|1082
7ZPQ|1|2|G|1083
*
7ZPQ|1|2|C|1090
7ZPQ|1|2|A|1091
7ZPQ|1|2|A|1092
7ZPQ|1|2|A|1093
7ZPQ|1|2|G|1094
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain AA
- 40S ribosomal protein S0-A
- Chain AV
- 40S ribosomal protein S21-A
- Chain AW
- RPS22A isoform 1
- Chain Aa
- RPS26B isoform 1
- Chain Ab
- 40S ribosomal protein S27-A
Coloring options: