J3_7ZPQ_007
3D structure
- PDB id
- 7ZPQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the RQT-bound 80S ribosome from S. cerevisiae (C1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.47 Å
Loop
- Sequence
- UGGA*UAC*GGAA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7ZPQ_007 not in the Motif Atlas
- Homologous match to J3_4V88_036
- Geometric discrepancy: 0.1151
- The information below is about J3_4V88_036
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_52655.2
- Basepair signature
- cWW-tSH-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
7ZPQ|1|2|U|1168
7ZPQ|1|2|G|1169
7ZPQ|1|2|G|1170
7ZPQ|1|2|A|1171
*
7ZPQ|1|2|U|1468
7ZPQ|1|2|A|1469
7ZPQ|1|2|C|1470
*
7ZPQ|1|2|G|1574
7ZPQ|1|2|G|1575
7ZPQ|1|2|A|1576
7ZPQ|1|2|A|1577
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain 6
- Transfer RNA; tRNA
- Chain AF
- Rps5p
- Chain AQ
- 40S ribosomal protein S16-A
- Chain AS
- 40S ribosomal protein S18-A
- Chain AT
- 40S ribosomal protein S19-A
- Chain AZ
- 40S ribosomal protein S25
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