J3_7ZPQ_014
3D structure
- PDB id
- 7ZPQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the RQT-bound 80S ribosome from S. cerevisiae (C1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.47 Å
Loop
- Sequence
- CU*AUGAAAAG*CG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7ZPQ_014 not in the Motif Atlas
- Homologous match to J3_5TBW_002
- Geometric discrepancy: 0.0741
- The information below is about J3_5TBW_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_69021.1
- Basepair signature
- cWW-tWH-cWW-tSH-F-cWW-F
- Number of instances in this motif group
- 7
Unit IDs
7ZPQ|1|3|C|19
7ZPQ|1|3|U|20
*
7ZPQ|1|5|A|369
7ZPQ|1|5|U|370
7ZPQ|1|5|G|371
7ZPQ|1|5|A|372
7ZPQ|1|5|A|373
7ZPQ|1|5|A|374
7ZPQ|1|5|A|375
7ZPQ|1|5|G|376
*
7ZPQ|1|5|C|403
7ZPQ|1|5|G|404
Current chains
- Chain 3
- 5.8S ribosomal RNA
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain BC
- RPL4A isoform 1
- Chain BX
- 60S ribosomal protein L26-A
- Chain Bk
- 60S ribosomal protein L39
Coloring options: