J3_7ZPQ_016
3D structure
- PDB id
- 7ZPQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the RQT-bound 80S ribosome from S. cerevisiae (C1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.47 Å
Loop
- Sequence
- CAAAUUUGAAA*UAAUUUGGAG*CGAAG
- Length
- 26 nucleotides
- Bulged bases
- 7ZPQ|1|5|U|117, 7ZPQ|1|5|G|156
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7ZPQ_016 not in the Motif Atlas
- Homologous match to J3_8C3A_001
- Geometric discrepancy: 0.0785
- The information below is about J3_8C3A_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_88489.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F-tWH-F-F-tHS-cWW-cWW-F-F
- Number of instances in this motif group
- 2
Unit IDs
7ZPQ|1|5|C|113
7ZPQ|1|5|A|114
7ZPQ|1|5|A|115
7ZPQ|1|5|A|116
7ZPQ|1|5|U|117
7ZPQ|1|5|U|118
7ZPQ|1|5|U|119
7ZPQ|1|5|G|120
7ZPQ|1|5|A|121
7ZPQ|1|5|A|122
7ZPQ|1|5|A|123
*
7ZPQ|1|5|U|149
7ZPQ|1|5|A|150
7ZPQ|1|5|A|151
7ZPQ|1|5|U|152
7ZPQ|1|5|U|153
7ZPQ|1|5|U|154
7ZPQ|1|5|G|155
7ZPQ|1|5|G|156
7ZPQ|1|5|A|157
7ZPQ|1|5|G|158
*
7ZPQ|1|5|C|263
7ZPQ|1|5|G|264
7ZPQ|1|5|A|265
7ZPQ|1|5|A|266
7ZPQ|1|5|G|267
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain BG
- 60S ribosomal protein L8-A
- Chain BK
- 60S ribosomal protein L13-A
- Chain BM
- 60S ribosomal protein L15-A
- Chain Bg
- 60S ribosomal protein L35-A
- Chain Bh
- 60S ribosomal protein L36-A
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