3D structure

PDB id
7ZPQ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the RQT-bound 80S ribosome from S. cerevisiae (C1)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.47 Å

Loop

Sequence
AUUG*CUUAUU*AAGACAUU
Length
18 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7ZPQ_026 not in the Motif Atlas
Homologous match to J3_5TBW_012
Geometric discrepancy: 0.0769
The information below is about J3_5TBW_012
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_18654.1
Basepair signature
cWW-F-F-tSH-tHW-F-F-F-cWW-F-cWW-F-F
Number of instances in this motif group
2

Unit IDs

7ZPQ|1|5|A|2432
7ZPQ|1|5|U|2433
7ZPQ|1|5|U|2434
7ZPQ|1|5|G|2435
*
7ZPQ|1|5|C|2512
7ZPQ|1|5|U|2513
7ZPQ|1|5|U|2514
7ZPQ|1|5|A|2515
7ZPQ|1|5|U|2516
7ZPQ|1|5|U|2517
*
7ZPQ|1|5|A|2590
7ZPQ|1|5|A|2591
7ZPQ|1|5|G|2592
7ZPQ|1|5|A|2593
7ZPQ|1|5|C|2594
7ZPQ|1|5|A|2595
7ZPQ|1|5|U|2596
7ZPQ|1|5|U|2597

Current chains

Chain 5
25S ribosomal RNA

Nearby chains

Chain BA
60S ribosomal protein L2-A
Chain BG
60S ribosomal protein L8-A
Chain BM
60S ribosomal protein L15-A
Chain Bh
60S ribosomal protein L36-A

Coloring options:


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