J3_7ZPQ_026
3D structure
- PDB id
- 7ZPQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the RQT-bound 80S ribosome from S. cerevisiae (C1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.47 Å
Loop
- Sequence
- AUUG*CUUAUU*AAGACAUU
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7ZPQ_026 not in the Motif Atlas
- Homologous match to J3_5TBW_012
- Geometric discrepancy: 0.0769
- The information below is about J3_5TBW_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_18654.1
- Basepair signature
- cWW-F-F-tSH-tHW-F-F-F-cWW-F-cWW-F-F
- Number of instances in this motif group
- 2
Unit IDs
7ZPQ|1|5|A|2432
7ZPQ|1|5|U|2433
7ZPQ|1|5|U|2434
7ZPQ|1|5|G|2435
*
7ZPQ|1|5|C|2512
7ZPQ|1|5|U|2513
7ZPQ|1|5|U|2514
7ZPQ|1|5|A|2515
7ZPQ|1|5|U|2516
7ZPQ|1|5|U|2517
*
7ZPQ|1|5|A|2590
7ZPQ|1|5|A|2591
7ZPQ|1|5|G|2592
7ZPQ|1|5|A|2593
7ZPQ|1|5|C|2594
7ZPQ|1|5|A|2595
7ZPQ|1|5|U|2596
7ZPQ|1|5|U|2597
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain BA
- 60S ribosomal protein L2-A
- Chain BG
- 60S ribosomal protein L8-A
- Chain BM
- 60S ribosomal protein L15-A
- Chain Bh
- 60S ribosomal protein L36-A
Coloring options: