J3_7ZPQ_028
3D structure
- PDB id
- 7ZPQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the RQT-bound 80S ribosome from S. cerevisiae (C1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.47 Å
Loop
- Sequence
- CUC*GAA*UAAAAG
- Length
- 12 nucleotides
- Bulged bases
- 7ZPQ|1|5|A|2703
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7ZPQ_028 not in the Motif Atlas
- Homologous match to J3_8C3A_010
- Geometric discrepancy: 0.1105
- The information below is about J3_8C3A_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_91491.5
- Basepair signature
- cWW-F-tWW-tHW-cWW-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
7ZPQ|1|5|C|2664
7ZPQ|1|5|U|2665
7ZPQ|1|5|C|2666
*
7ZPQ|1|5|G|2690
7ZPQ|1|5|A|2691
7ZPQ|1|5|A|2692
*
7ZPQ|1|5|U|2701
7ZPQ|1|5|A|2702
7ZPQ|1|5|A|2703
7ZPQ|1|5|A|2704
7ZPQ|1|5|A|2705
7ZPQ|1|5|G|2706
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain 4
- 5S ribosomal RNA; 5S rRNA
- Chain 6
- Transfer RNA; tRNA
- Chain BD
- RPL5 isoform 1
- Chain BJ
- RPL11B isoform 1
- Chain BS
- 60S ribosomal protein L21-A
Coloring options: