J3_7ZPQ_031

3D structure

PDB id

7ZPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the RQT-bound 80S ribosome from S. cerevisiae (C1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

AGAUUAAG*CGCGCAAAU*AGU

Length

20 nucleotides

Bulged bases

7ZPQ|1|2|A|46, 7ZPQ|1|2|A|47

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7ZPQ_031 not in the Motif Atlas

Homologous match to J3_8P9A_069

Geometric discrepancy: 0.0653

The information below is about J3_8P9A_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.4

Basepair signature

cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

7ZPQ|1|2|A|41
7ZPQ|1|2|G|42
7ZPQ|1|2|A|43
7ZPQ|1|2|U|44
7ZPQ|1|2|U|45
7ZPQ|1|2|A|46
7ZPQ|1|2|A|47
7ZPQ|1|2|G|48
*
7ZPQ|1|2|C|431
7ZPQ|1|2|G|432
7ZPQ|1|2|C|433
7ZPQ|1|2|G|434
7ZPQ|1|2|C|435
7ZPQ|1|2|A|436
7ZPQ|1|2|A|437
7ZPQ|1|2|A|438
7ZPQ|1|2|U|439
*
7ZPQ|1|2|A|464
7ZPQ|1|2|G|465
7ZPQ|1|2|U|466

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AJ

40S ribosomal protein S9-A

Chain AX

40S ribosomal protein S23-A