J3_7ZPQ_035
3D structure
- PDB id
- 7ZPQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the RQT-bound 80S ribosome from S. cerevisiae (C1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.47 Å
Loop
- Sequence
- CU*AUGAAAAGAAC*GAGUGAAAAAGUACG
- Length
- 28 nucleotides
- Bulged bases
- 7ZPQ|1|5|A|398, 7ZPQ|1|5|A|402
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7ZPQ_035 not in the Motif Atlas
- Geometric match to J3_5TBW_062
- Geometric discrepancy: 0.0528
- The information below is about J3_5TBW_062
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_91149.1
- Basepair signature
- cWW-cWS-tSH-F-tWH-cSS-cWW-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-F-cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
7ZPQ|1|3|C|19
7ZPQ|1|3|U|20
*
7ZPQ|1|5|A|369
7ZPQ|1|5|U|370
7ZPQ|1|5|G|371
7ZPQ|1|5|A|372
7ZPQ|1|5|A|373
7ZPQ|1|5|A|374
7ZPQ|1|5|A|375
7ZPQ|1|5|G|376
7ZPQ|1|5|A|377
7ZPQ|1|5|A|378
7ZPQ|1|5|C|379
*
7ZPQ|1|5|G|390
7ZPQ|1|5|A|391
7ZPQ|1|5|G|392
7ZPQ|1|5|U|393
7ZPQ|1|5|G|394
7ZPQ|1|5|A|395
7ZPQ|1|5|A|396
7ZPQ|1|5|A|397
7ZPQ|1|5|A|398
7ZPQ|1|5|A|399
7ZPQ|1|5|G|400
7ZPQ|1|5|U|401
7ZPQ|1|5|A|402
7ZPQ|1|5|C|403
7ZPQ|1|5|G|404
Current chains
- Chain 3
- 5.8S ribosomal RNA
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain BC
- RPL4A isoform 1
- Chain BO
- 60S ribosomal protein L17-A
- Chain BX
- 60S ribosomal protein L26-A
- Chain Bk
- 60S ribosomal protein L39
Coloring options: