J3_7ZQ5_015

3D structure

PDB id

7ZQ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S E. coli ribosome with truncated uL23 and uL24 loops

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UCGACCC*GGAAA*UA

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7ZQ5_015 not in the Motif Atlas

Homologous match to J3_7A0S_018

Geometric discrepancy: 0.594

The information below is about J3_7A0S_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_94309.1

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW-F

Number of instances in this motif group

9

Unit IDs

7ZQ5|1|b|U|1344
7ZQ5|1|b|C|1345
7ZQ5|1|b|G|1346
7ZQ5|1|b|A|1347
7ZQ5|1|b|C|1348
7ZQ5|1|b|C|1349
7ZQ5|1|b|C|1350
*
7ZQ5|1|b|G|1381
7ZQ5|1|b|G|1382
7ZQ5|1|b|A|1383
7ZQ5|1|b|A|1384
7ZQ5|1|b|A|1385
*
7ZQ5|1|b|U|1402
7ZQ5|1|b|A|1403

Current chains

Chain b

23S rRNA

Nearby chains

Chain t

50S ribosomal protein L23