J3_7ZQ6_005

3D structure

PDB id

7ZQ6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S E. coli ribosome with truncated uL23 and uL24 loops and a stalled filamin domain 5 nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7ZQ6_005 not in the Motif Atlas

Homologous match to J3_8VTW_002

Geometric discrepancy: 0.0874

The information below is about J3_8VTW_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.5

Basepair signature

cWW-tSH-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

7ZQ6|1|b|C|698
7ZQ6|1|b|A|699
7ZQ6|1|b|G|700
*
7ZQ6|1|b|C|732
7ZQ6|1|b|G|733
7ZQ6|1|b|A|734
7ZQ6|1|b|A|735
7ZQ6|1|b|C|736
*
7ZQ6|1|b|G|760
7ZQ6|1|b|A|761
7ZQ6|1|b|U|762
7ZQ6|1|b|G|763

Current chains

Chain b

23S rRNA

Nearby chains

Chain c

50S ribosomal protein L2