J3_7ZRS_003

3D structure

PDB id

7ZRS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the RQT-bound 80S ribosome from S. cerevisiae (C2) - composite map

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

AGAG*CAG*UCGAAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7ZRS_003 not in the Motif Atlas

Homologous match to J3_4V88_032

Geometric discrepancy: 0.114

The information below is about J3_4V88_032

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_54972.1

Basepair signature

cWW-tWW-F-cWW-F-tHS-F-cWW

Number of instances in this motif group

2

Unit IDs

7ZRS|1|2|A|760
7ZRS|1|2|G|761
7ZRS|1|2|A|762
7ZRS|1|2|G|763
*
7ZRS|1|2|C|773
7ZRS|1|2|A|774
7ZRS|1|2|G|775
*
7ZRS|1|2|U|785
7ZRS|1|2|C|786
7ZRS|1|2|G|787
7ZRS|1|2|A|788
7ZRS|1|2|A|789
7ZRS|1|2|U|790

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AE

40S ribosomal protein S4-A

Chain AJ

40S ribosomal protein S9-A

Chain AY

40S ribosomal protein S24-A