J3_7ZRS_006

3D structure

PDB id

7ZRS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the RQT-bound 80S ribosome from S. cerevisiae (C2) - composite map

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

CCAG*CUAGUAA*UGAUUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7ZRS_006 not in the Motif Atlas

Homologous match to J3_4V88_035

Geometric discrepancy: 0.211

The information below is about J3_4V88_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.1

Basepair signature

cWW-tSH-tHW-cSH-cSS-tHH-cSS-tWW-F-tHS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

7ZRS|1|2|C|1161
7ZRS|1|2|C|1162
7ZRS|1|2|A|1163
7ZRS|1|2|G|1164
*
7ZRS|1|2|C|1581
7ZRS|1|2|U|1582
7ZRS|1|2|A|1583
7ZRS|1|2|G|1584
7ZRS|1|2|U|1585
7ZRS|1|2|A|1586
7ZRS|1|2|A|1587
*
7ZRS|1|2|U|1609
7ZRS|1|2|G|1610
7ZRS|1|2|A|1611
7ZRS|1|2|U|1612
7ZRS|1|2|U|1613
7ZRS|1|2|A|1614
7ZRS|1|2|C|1615
7ZRS|1|2|G|1616

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AF

Rps5p

Chain AQ

40S ribosomal protein S16-A

Chain Ac

RPS28A isoform 1