J3_7ZRS_009
3D structure
- PDB id
- 7ZRS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the RQT-bound 80S ribosome from S. cerevisiae (C2) - composite map
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.8 Å
Loop
- Sequence
- CCAGAC*GGGUG*UUAGACG
- Length
- 18 nucleotides
- Bulged bases
- 7ZRS|1|2|A|1217, 7ZRS|1|2|G|1445, 7ZRS|1|2|C|1447
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7ZRS_009 not in the Motif Atlas
- Homologous match to J3_8C3A_041
- Geometric discrepancy: 0.1354
- The information below is about J3_8C3A_041
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_23728.1
- Basepair signature
- cWW-tWH-F-F-tHS-cWW-cWW-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
7ZRS|1|2|C|1215
7ZRS|1|2|C|1216
7ZRS|1|2|A|1217
7ZRS|1|2|G|1218
7ZRS|1|2|A|1219
7ZRS|1|2|C|1220
*
7ZRS|1|2|G|1263
7ZRS|1|2|G|1264
7ZRS|1|2|G|1265
7ZRS|1|2|U|1266
7ZRS|1|2|G|1267
*
7ZRS|1|2|U|1442
7ZRS|1|2|U|1443
7ZRS|1|2|A|1444
7ZRS|1|2|G|1445
7ZRS|1|2|A|1446
7ZRS|1|2|C|1447
7ZRS|1|2|G|1448
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain AK
- 40S ribosomal protein S10-A
- Chain Ad
- RPS29A isoform 1
- Chain Af
- RPS31 isoform 1
Coloring options: