J3_7ZRS_018

3D structure

PDB id

7ZRS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the RQT-bound 80S ribosome from S. cerevisiae (C2) - composite map

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

UGAACUA*UAG*CGAA

Length

14 nucleotides

Bulged bases

7ZRS|1|5|A|818, 7ZRS|1|5|G|925

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7ZRS_018 not in the Motif Atlas

Homologous match to J3_8C3A_003

Geometric discrepancy: 0.0587

The information below is about J3_8C3A_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_39238.5

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

7ZRS|1|5|U|815
7ZRS|1|5|G|816
7ZRS|1|5|A|817
7ZRS|1|5|A|818
7ZRS|1|5|C|819
7ZRS|1|5|U|820
7ZRS|1|5|A|821
*
7ZRS|1|5|U|906
7ZRS|1|5|A|907
7ZRS|1|5|G|908
*
7ZRS|1|5|C|924
7ZRS|1|5|G|925
7ZRS|1|5|A|926
7ZRS|1|5|A|927

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain BA

60S ribosomal protein L2-A

Chain BM

60S ribosomal protein L15-A

Chain Bi

60S ribosomal protein L37-A