J3_7ZRS_028
3D structure
- PDB id
- 7ZRS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the RQT-bound 80S ribosome from S. cerevisiae (C2) - composite map
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.8 Å
Loop
- Sequence
- CUC*GAA*UAAAAG
- Length
- 12 nucleotides
- Bulged bases
- 7ZRS|1|5|A|2704
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7ZRS_028 not in the Motif Atlas
- Homologous match to J3_5TBW_013
- Geometric discrepancy: 0.0856
- The information below is about J3_5TBW_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_91491.5
- Basepair signature
- cWW-F-tWW-tHW-cWW-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
7ZRS|1|5|C|2665
7ZRS|1|5|U|2666
7ZRS|1|5|C|2667
*
7ZRS|1|5|G|2691
7ZRS|1|5|A|2692
7ZRS|1|5|A|2693
*
7ZRS|1|5|U|2702
7ZRS|1|5|A|2703
7ZRS|1|5|A|2704
7ZRS|1|5|A|2705
7ZRS|1|5|A|2706
7ZRS|1|5|G|2707
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain 4
- 5S ribosomal RNA; 5S rRNA
- Chain BD
- RPL5 isoform 1
- Chain BJ
- RPL11B isoform 1
- Chain BS
- 60S ribosomal protein L21-A
- Chain Bn
- 60S ribosomal protein L42-A
Coloring options: