J3_7ZTA_007

3D structure

PDB id

7ZTA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of an Escherichia coli 70S ribosome stalled by Tetracenomycin X during translation of an MAAAPQK(C) peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UUUAAUUC*GAAGAACCUUAC*GGCUA

Length

25 nucleotides

Bulged bases

7ZTA|1|16S1|A|975, 7ZTA|1|16S1|G|976, 7ZTA|1|16S1|A|978

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7ZTA_007 not in the Motif Atlas

Homologous match to J3_5J7L_006

Geometric discrepancy: 0.0714

The information below is about J3_5J7L_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_83516.4

Basepair signature

cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

7ZTA|1|16S1|U|955
7ZTA|1|16S1|U|956
7ZTA|1|16S1|U|957
7ZTA|1|16S1|A|958
7ZTA|1|16S1|A|959
7ZTA|1|16S1|U|960
7ZTA|1|16S1|U|961
7ZTA|1|16S1|C|962
*
7ZTA|1|16S1|G|973
7ZTA|1|16S1|A|974
7ZTA|1|16S1|A|975
7ZTA|1|16S1|G|976
7ZTA|1|16S1|A|977
7ZTA|1|16S1|A|978
7ZTA|1|16S1|C|979
7ZTA|1|16S1|C|980
7ZTA|1|16S1|U|981
7ZTA|1|16S1|U|982
7ZTA|1|16S1|A|983
7ZTA|1|16S1|C|984
*
7ZTA|1|16S1|G|1221
7ZTA|1|16S1|G|1222
7ZTA|1|16S1|C|1223
7ZTA|1|16S1|U|1224
7ZTA|1|16S1|A|1225

Current chains

Chain 16S1

16S ribosomal RNA

Nearby chains

Chain ATR1

Transfer RNA; tRNA

Chain S101

30S ribosomal protein S10

Chain S131

30S ribosomal protein S13

Chain S141

30S ribosomal protein S14

Chain S191

30S ribosomal protein S19