J3_7ZTA_029

3D structure

PDB id

7ZTA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of an Escherichia coli 70S ribosome stalled by Tetracenomycin X during translation of an MAAAPQK(C) peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7ZTA_029 not in the Motif Atlas

Homologous match to J3_4LFB_002

Geometric discrepancy: 0.0618

The information below is about J3_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85722.1

Basepair signature

cWW-F-F-cSS-F-cWW-tHH-tWW-F-tWH-tHS-cSH-cWW

Number of instances in this motif group

5

Unit IDs

7ZTA|1|16S1|C|936
7ZTA|1|16S1|A|937
7ZTA|1|16S1|A|938
7ZTA|1|16S1|G|939
*
7ZTA|1|16S1|C|1344
7ZTA|1|16S1|U|1345
7ZTA|1|16S1|A|1346
7ZTA|1|16S1|G|1347
7ZTA|1|16S1|U|1348
7ZTA|1|16S1|A|1349
7ZTA|1|16S1|A|1350
*
7ZTA|1|16S1|U|1372
7ZTA|1|16S1|G|1373
7ZTA|1|16S1|A|1374
7ZTA|1|16S1|A|1375
7ZTA|1|16S1|U|1376
7ZTA|1|16S1|A|1377
7ZTA|1|16S1|C|1378
7ZTA|1|16S1|G|1379

Current chains

Chain 16S1

16S ribosomal RNA

Nearby chains

Chain ETR1

Transfer RNA; tRNA

Chain S071

30S ribosomal protein S7

Chain S091

30S ribosomal protein S9