J3_7ZTA_034

3D structure

PDB id

7ZTA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of an Escherichia coli 70S ribosome stalled by Tetracenomycin X during translation of an MAAAPQK(C) peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CCUG*CGAUAGUGAACCAGUAC*GGAAAG

Length

27 nucleotides

Bulged bases

7ZTA|1|23S1|U|34, 7ZTA|1|23S1|U|448, 7ZTA|1|23S1|C|456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7ZTA_034 not in the Motif Atlas

Homologous match to J3_5J7L_067

Geometric discrepancy: 0.071

The information below is about J3_5J7L_067

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_30040.2

Basepair signature

cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F

Number of instances in this motif group

7

Unit IDs

7ZTA|1|23S1|C|32
7ZTA|1|23S1|C|33
7ZTA|1|23S1|U|34
7ZTA|1|23S1|G|35
*
7ZTA|1|23S1|C|445
7ZTA|1|23S1|G|446
7ZTA|1|23S1|A|447
7ZTA|1|23S1|U|448
7ZTA|1|23S1|A|449
7ZTA|1|23S1|G|450
7ZTA|1|23S1|U|451
7ZTA|1|23S1|G|452
7ZTA|1|23S1|A|453
7ZTA|1|23S1|A|454
7ZTA|1|23S1|C|455
7ZTA|1|23S1|C|456
7ZTA|1|23S1|A|457
7ZTA|1|23S1|G|458
7ZTA|1|23S1|U|459
7ZTA|1|23S1|A|460
7ZTA|1|23S1|C|461
*
7ZTA|1|23S1|G|468
7ZTA|1|23S1|G|469
7ZTA|1|23S1|A|470
7ZTA|1|23S1|A|471
7ZTA|1|23S1|A|472
7ZTA|1|23S1|G|473

Current chains

Chain 23S1

23S ribosomal RNA

Nearby chains

Chain L041

50S ribosomal protein L4

Chain L201

50S ribosomal protein L20

Chain L231

50S ribosomal protein L23

Chain L341

50S ribosomal protein L34