J3_7ZUX_006

3D structure

PDB id

7ZUX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Collided ribosome in a disome unit from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CCAG*CUAGUAA*UGAUUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7ZUX_006 not in the Motif Atlas

Homologous match to J3_4V88_035

Geometric discrepancy: 0.2842

The information below is about J3_4V88_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.1

Basepair signature

cWW-tSH-tHW-cSH-cSS-tHH-cSS-tWW-F-tHS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

7ZUX|1|2|C|1161
7ZUX|1|2|C|1162
7ZUX|1|2|A|1163
7ZUX|1|2|G|1164
*
7ZUX|1|2|C|1581
7ZUX|1|2|U|1582
7ZUX|1|2|A|1583
7ZUX|1|2|G|1584
7ZUX|1|2|U|1585
7ZUX|1|2|A|1586
7ZUX|1|2|A|1587
*
7ZUX|1|2|U|1609
7ZUX|1|2|G|1610
7ZUX|1|2|A|1611
7ZUX|1|2|U|1612
7ZUX|1|2|U|1613
7ZUX|1|2|A|1614
7ZUX|1|2|C|1615
7ZUX|1|2|G|1616

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain DF

40S ribosomal protein S5

Chain DQ

40S ribosomal protein S16-A

Chain Dc

40S ribosomal protein S28-A