J3_7ZUX_009

3D structure

PDB id

7ZUX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Collided ribosome in a disome unit from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CCAGAC*GGGUG*UUAGACG

Length

18 nucleotides

Bulged bases

7ZUX|1|2|A|1217, 7ZUX|1|2|G|1445, 7ZUX|1|2|C|1447

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7ZUX_009 not in the Motif Atlas

Homologous match to J3_8C3A_041

Geometric discrepancy: 0.1338

The information below is about J3_8C3A_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_23728.1

Basepair signature

cWW-tWH-F-F-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

2

Unit IDs

7ZUX|1|2|C|1215
7ZUX|1|2|C|1216
7ZUX|1|2|A|1217
7ZUX|1|2|G|1218
7ZUX|1|2|A|1219
7ZUX|1|2|C|1220
*
7ZUX|1|2|G|1263
7ZUX|1|2|G|1264
7ZUX|1|2|G|1265
7ZUX|1|2|U|1266
7ZUX|1|2|G|1267
*
7ZUX|1|2|U|1442
7ZUX|1|2|U|1443
7ZUX|1|2|A|1444
7ZUX|1|2|G|1445
7ZUX|1|2|A|1446
7ZUX|1|2|C|1447
7ZUX|1|2|G|1448

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain DK

40S ribosomal protein S10-A

Chain Dd

40S ribosomal protein S29-A

Chain Df

Ubiquitin