J3_7ZW0_009

3D structure

PDB id

7ZW0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

FAP-80S Complex - Rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CCAGAC*GGGUG*UUAGACG

Length

18 nucleotides

Bulged bases

7ZW0|1|2|A|1217, 7ZW0|1|2|G|1445, 7ZW0|1|2|C|1447

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7ZW0_009 not in the Motif Atlas

Homologous match to J3_8C3A_041

Geometric discrepancy: 0.1041

The information below is about J3_8C3A_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_23728.1

Basepair signature

cWW-tWH-F-F-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

2

Unit IDs

7ZW0|1|2|C|1215
7ZW0|1|2|C|1216
7ZW0|1|2|A|1217
7ZW0|1|2|G|1218
7ZW0|1|2|A|1219
7ZW0|1|2|C|1220
*
7ZW0|1|2|G|1263
7ZW0|1|2|G|1264
7ZW0|1|2|G|1265
7ZW0|1|2|U|1266
7ZW0|1|2|G|1267
*
7ZW0|1|2|U|1442
7ZW0|1|2|U|1443
7ZW0|1|2|A|1444
7ZW0|1|2|G|1445
7ZW0|1|2|A|1446
7ZW0|1|2|C|1447
7ZW0|1|2|G|1448

Current chains

Chain 2

18S ribosomal RNA (RDN18-1)

Nearby chains

Chain sC

40S ribosomal protein S10-A

Chain sM

RPS29A isoform 1

Chain sN

40S ribosomal protein S31