3D structure

PDB id
7ZW0 (explore in PDB, NAKB, or RNA 3D Hub)
Description
FAP-80S Complex - Rotated state
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
GAAA*UGAUAAC*GUC
Length
14 nucleotides
Bulged bases
7ZW0|1|LA|U|1840, 7ZW0|1|LA|A|1841
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7ZW0_022 not in the Motif Atlas
Homologous match to J3_8C3A_007
Geometric discrepancy: 0.0833
The information below is about J3_8C3A_007
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_74051.1
Basepair signature
cWW-tSH-tWW-tHW-F-F-cWW-cWW
Number of instances in this motif group
3

Unit IDs

7ZW0|1|LA|G|1488
7ZW0|1|LA|A|1489
7ZW0|1|LA|A|1490
7ZW0|1|LA|A|1491
*
7ZW0|1|LA|U|1837
7ZW0|1|LA|G|1838
7ZW0|1|LA|A|1839
7ZW0|1|LA|U|1840
7ZW0|1|LA|A|1841
7ZW0|1|LA|A|1842
7ZW0|1|LA|C|1843
*
7ZW0|1|LA|G|1852
7ZW0|1|LA|U|1853
7ZW0|1|LA|C|1854

Current chains

Chain LA
25S ribosomal RNA (RDN25-1)

Nearby chains

Chain LD
5.8S ribosomal RNA; 5.8S rRNA
Chain Lj
60S ribosomal protein L34-A
Chain Lm
60S ribosomal protein L37-A
Chain Lo
60S ribosomal protein L39

Coloring options:


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