J3_7ZW0_028

3D structure

PDB id

7ZW0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

FAP-80S Complex - Rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UAUC*GUU*ACUAAUA

Length

14 nucleotides

Bulged bases

7ZW0|1|LA|A|2887, 7ZW0|1|LA|U|2888

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7ZW0_028 not in the Motif Atlas

Homologous match to J3_8C3A_011

Geometric discrepancy: 0.0555

The information below is about J3_8C3A_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_98597.1

Basepair signature

cWW-tWW-cHW-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

2

Unit IDs

7ZW0|1|LA|U|2886
7ZW0|1|LA|A|2887
7ZW0|1|LA|U|2888
7ZW0|1|LA|C|2889
*
7ZW0|1|LA|G|2914
7ZW0|1|LA|U|2915
7ZW0|1|LA|U|2916
*
7ZW0|1|LA|A|2930
7ZW0|1|LA|C|2931
7ZW0|1|LA|U|2932
7ZW0|1|LA|A|2933
7ZW0|1|LA|A|2934
7ZW0|1|LA|U|2935
7ZW0|1|LA|A|2936

Current chains

Chain LA

25S ribosomal RNA (RDN25-1)

Nearby chains

Chain LF

60S ribosomal protein L3

Chain LR

60S ribosomal protein L16-A

Chain LY

60S ribosomal protein L23-A