J3_8A3D_011
3D structure
- PDB id
- 8A3D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human mature large subunit of the ribosome with eIF6 and homoharringtonine bound
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.67 Å
Loop
- Sequence
- UG*CGACC*GA
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8A3D_011 not in the Motif Atlas
- Homologous match to J3_8C3A_054
- Geometric discrepancy: 0.2762
- The information below is about J3_8C3A_054
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_16991.1
- Basepair signature
- cWW-F-cWW-F-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
8A3D|1|A|U|2575
8A3D|1|A|G|2576
*
8A3D|1|A|C|2585
8A3D|1|A|G|2586
8A3D|1|A|A|2587
8A3D|1|A|C|2588
8A3D|1|A|C|2589
*
8A3D|1|A|G|2756
8A3D|1|A|A|2757
Current chains
- Chain A
- 28S ribosomal RNA
Nearby chains
- Chain T
- 60S ribosomal protein L27
- Chain a
- 60S ribosomal protein L34
Coloring options: