J3_8A3L_013

3D structure

PDB id

8A3L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into the binding of bS1 to the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.42 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

8A3L|1|a|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8A3L_013 not in the Motif Atlas

Homologous match to J3_7A0S_007

Geometric discrepancy: 0.1157

The information below is about J3_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_47341.1

Basepair signature

cWW-tHH-F-tHW-tHS-tWW-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

8A3L|1|a|C|1306
8A3L|1|a|A|1307
8A3L|1|a|A|1308
8A3L|1|a|G|1309
*
8A3L|1|a|C|1605
8A3L|1|a|C|1606
8A3L|1|a|C|1607
8A3L|1|a|A|1608
8A3L|1|a|A|1609
8A3L|1|a|A|1610
8A3L|1|a|C|1611
*
8A3L|1|a|G|1620
8A3L|1|a|U|1621
8A3L|1|a|G|1622

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L34