J3_8A3L_024

3D structure

PDB id

8A3L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into the binding of bS1 to the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.42 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

8A3L|1|A|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8A3L_024 not in the Motif Atlas

Homologous match to J3_4LFB_016

Geometric discrepancy: 0.1495

The information below is about J3_4LFB_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28881.1

Basepair signature

cWW-tWH-F-F-cWW-cWW-F-F-F-cWS-cWW

Number of instances in this motif group

2

Unit IDs

8A3L|1|A|C|990
8A3L|1|A|U|991
8A3L|1|A|U|992
8A3L|1|A|G|993
8A3L|1|A|A|994
8A3L|1|A|C|995
8A3L|1|A|A|996
8A3L|1|A|U|997
*
8A3L|1|A|A|1044
8A3L|1|A|C|1045
8A3L|1|A|A|1046
8A3L|1|A|G|1047
*
8A3L|1|A|C|1210
8A3L|1|A|U|1211
8A3L|1|A|U|1212
8A3L|1|A|A|1213
8A3L|1|A|C|1214
8A3L|1|A|G|1215

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain N

30S ribosomal protein S14