J3_8A57_003

3D structure

PDB id

8A57 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of HflXr bound to the Listeria monocytogenes 50S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

CAAAC*GGGUUGUA*UG

Length

15 nucleotides

Bulged bases

8A57|1|A|U|300

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8A57_003 not in the Motif Atlas

Homologous match to J3_4WF9_022

Geometric discrepancy: 0.442

The information below is about J3_4WF9_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_97971.2

Basepair signature

cWW-F-F-tSH-cSH-tWH-tWS-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

8A57|1|A|C|271
8A57|1|A|A|272
8A57|1|A|A|273
8A57|1|A|A|274
8A57|1|A|C|275
*
8A57|1|A|G|294
8A57|1|A|G|295
8A57|1|A|G|296
8A57|1|A|U|297
8A57|1|A|U|298
8A57|1|A|G|299
8A57|1|A|U|300
8A57|1|A|A|301
*
8A57|1|A|U|415
8A57|1|A|G|416

Current chains

Chain A

23S ribosomal RNA

Nearby chains