J3_8A5I_004

3D structure

PDB id

8A5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Lincomycin bound to the Listeria monocytogenes 50S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

UGAUCUA*UAG*CGAA

Length

14 nucleotides

Bulged bases

8A5I|1|A|U|732

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8A5I_004 not in the Motif Atlas

Homologous match to J3_8VTW_001

Geometric discrepancy: 0.1635

The information below is about J3_8VTW_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_39238.5

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

8A5I|1|A|U|729
8A5I|1|A|G|730
8A5I|1|A|A|731
8A5I|1|A|U|732
8A5I|1|A|C|733
8A5I|1|A|U|734
8A5I|1|A|A|735
*
8A5I|1|A|U|819
8A5I|1|A|A|820
8A5I|1|A|G|821
*
8A5I|1|A|C|837
8A5I|1|A|G|838
8A5I|1|A|A|839
8A5I|1|A|A|840

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 7

50S ribosomal protein L34

Chain G

50S ribosomal protein L2