J3_8A5I_007

3D structure

PDB id

8A5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Lincomycin bound to the Listeria monocytogenes 50S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

CUAAG*CGCAAAC*GUAG

Length

16 nucleotides

Bulged bases

8A5I|1|A|A|1658

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8A5I_007 not in the Motif Atlas

Homologous match to J3_4WF9_005

Geometric discrepancy: 0.0782

The information below is about J3_4WF9_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_68164.1

Basepair signature

cWW-tSH-F-F-tHW-F-F-cWW-cWW-F

Number of instances in this motif group

1

Unit IDs

8A5I|1|A|C|1349
8A5I|1|A|U|1350
8A5I|1|A|A|1351
8A5I|1|A|A|1352
8A5I|1|A|G|1353
*
8A5I|1|A|C|1654
8A5I|1|A|G|1655
8A5I|1|A|C|1656
8A5I|1|A|A|1657
8A5I|1|A|A|1658
8A5I|1|A|A|1659
8A5I|1|A|C|1660
*
8A5I|1|A|G|1669
8A5I|1|A|U|1670
8A5I|1|A|A|1671
8A5I|1|A|G|1672

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 7

50S ribosomal protein L34