J3_8A5I_018
3D structure
- PDB id
- 8A5I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Lincomycin bound to the Listeria monocytogenes 50S ribosomal subunit.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- CUUG*CGAUAGUGAACCAGUAC*GGAAAG
- Length
- 27 nucleotides
- Bulged bases
- 8A5I|1|A|U|494, 8A5I|1|A|C|502
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8A5I_018 not in the Motif Atlas
- Homologous match to J3_9DFE_003
- Geometric discrepancy: 0.0902
- The information below is about J3_9DFE_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07616.2
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 11
Unit IDs
8A5I|1|A|C|32
8A5I|1|A|U|33
8A5I|1|A|U|34
8A5I|1|A|G|35
*
8A5I|1|A|C|491
8A5I|1|A|G|492
8A5I|1|A|A|493
8A5I|1|A|U|494
8A5I|1|A|A|495
8A5I|1|A|G|496
8A5I|1|A|U|497
8A5I|1|A|G|498
8A5I|1|A|A|499
8A5I|1|A|A|500
8A5I|1|A|C|501
8A5I|1|A|C|502
8A5I|1|A|A|503
8A5I|1|A|G|504
8A5I|1|A|U|505
8A5I|1|A|A|506
8A5I|1|A|C|507
*
8A5I|1|A|G|514
8A5I|1|A|G|515
8A5I|1|A|A|516
8A5I|1|A|A|517
8A5I|1|A|A|518
8A5I|1|A|G|519
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 7
- 50S ribosomal protein L34
- Chain I
- 50S ribosomal protein L4
- Chain T
- 50S ribosomal protein L20
- Chain W
- 50S ribosomal protein L23
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