J3_8AGU_007

3D structure

PDB id

8AGU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast RQC complex in state E

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GAC*GCUAAGG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8AGU_007 not in the Motif Atlas

Homologous match to J3_5TBW_007

Geometric discrepancy: 0.1912

The information below is about J3_5TBW_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.3

Basepair signature

cWW-tWW-tHS-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

7

Unit IDs

8AGU|1|f|G|1230
8AGU|1|f|A|1231
8AGU|1|f|C|1232
*
8AGU|1|f|G|1256
8AGU|1|f|C|1257
8AGU|1|f|U|1258
8AGU|1|f|A|1259
8AGU|1|f|A|1260
8AGU|1|f|G|1261
8AGU|1|f|G|1262
*
8AGU|1|f|C|1277
8AGU|1|f|A|1278
8AGU|1|f|C|1279

Current chains

Chain f

25S rRNA

Nearby chains

Chain 0

60S acidic ribosomal protein P0

Chain z

60S ribosomal protein L12-B