3D structure

PDB id
8AGU (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast RQC complex in state E
Experimental method
ELECTRON MICROSCOPY
Resolution
2.7 Å

Loop

Sequence
UCGAUC*GGAAU*AA
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8AGU_010 not in the Motif Atlas
Homologous match to J3_5TBW_010
Geometric discrepancy: 0.0597
The information below is about J3_5TBW_010
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_70383.1
Basepair signature
cWW-F-cWW-F-F-F-F-F-cWW-F
Number of instances in this motif group
6

Unit IDs

8AGU|1|f|U|1526
8AGU|1|f|C|1527
8AGU|1|f|G|1528
8AGU|1|f|A|1529
8AGU|1|f|U|1530
8AGU|1|f|C|1531
*
8AGU|1|f|G|1591
8AGU|1|f|G|1592
8AGU|1|f|A|1593
8AGU|1|f|A|1594
8AGU|1|f|U|1595
*
8AGU|1|f|A|1612
8AGU|1|f|A|1613

Current chains

Chain f
25S rRNA

Nearby chains

Chain K
60S ribosomal protein L25
Chain T
60S ribosomal protein L34-A
Chain X
BJ4_G0032190.mRNA.1.CDS.1
Chain Y
60S ribosomal protein L39
Chain i
5.8S ribosomal RNA; 5.8S rRNA

Coloring options:


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