J3_8AGU_010
3D structure
- PDB id
- 8AGU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast RQC complex in state E
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- UCGAUC*GGAAU*AA
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8AGU_010 not in the Motif Atlas
- Homologous match to J3_5TBW_010
- Geometric discrepancy: 0.0597
- The information below is about J3_5TBW_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_70383.1
- Basepair signature
- cWW-F-cWW-F-F-F-F-F-cWW-F
- Number of instances in this motif group
- 6
Unit IDs
8AGU|1|f|U|1526
8AGU|1|f|C|1527
8AGU|1|f|G|1528
8AGU|1|f|A|1529
8AGU|1|f|U|1530
8AGU|1|f|C|1531
*
8AGU|1|f|G|1591
8AGU|1|f|G|1592
8AGU|1|f|A|1593
8AGU|1|f|A|1594
8AGU|1|f|U|1595
*
8AGU|1|f|A|1612
8AGU|1|f|A|1613
Current chains
- Chain f
- 25S rRNA
Nearby chains
- Chain K
- 60S ribosomal protein L25
- Chain T
- 60S ribosomal protein L34-A
- Chain X
- BJ4_G0032190.mRNA.1.CDS.1
- Chain Y
- 60S ribosomal protein L39
- Chain i
- 5.8S ribosomal RNA; 5.8S rRNA
Coloring options: