J3_8AGU_023
3D structure
- PDB id
- 8AGU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast RQC complex in state E
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- AGACG*CC*GAAAAU
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8AGU_023 not in the Motif Atlas
- Homologous match to J3_8P9A_058
- Geometric discrepancy: 0.0696
- The information below is about J3_8P9A_058
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_12393.2
- Basepair signature
- cWW-tSH-tHH-F-F-cWW-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
8AGU|1|f|A|1654
8AGU|1|f|G|1655
8AGU|1|f|A|1656
8AGU|1|f|C|1657
8AGU|1|f|G|1658
*
8AGU|1|f|C|1791
8AGU|1|f|C|1792
*
8AGU|1|f|G|1796
8AGU|1|f|A|1797
8AGU|1|f|A|1798
8AGU|1|f|A|1799
8AGU|1|f|A|1800
8AGU|1|f|U|1801
Current chains
- Chain f
- 25S rRNA
Nearby chains
- Chain T
- 60S ribosomal protein L34-A
- Chain c
- 60S ribosomal protein L43-A
- Chain d
- RPL41A isoform 1
- Chain j
- 60S ribosomal protein L2-A
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