3D structure

PDB id
8AGU (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast RQC complex in state E
Experimental method
ELECTRON MICROSCOPY
Resolution
2.7 Å

Loop

Sequence
GUC*GCCUAUCGAUCC*GGUGCC
Length
21 nucleotides
Bulged bases
8AGU|1|f|C|2760, 8AGU|1|f|C|2797
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8AGU_024 not in the Motif Atlas
Homologous match to J3_8C3A_056
Geometric discrepancy: 0.056
The information below is about J3_8C3A_056
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_27903.1
Basepair signature
cWW-F-F-F-cWW-F-F-F-F-tHW-tHW-cWW-F
Number of instances in this motif group
5

Unit IDs

8AGU|1|f|G|2651
8AGU|1|f|U|2652
8AGU|1|f|C|2653
*
8AGU|1|f|G|2754
8AGU|1|f|C|2755
8AGU|1|f|C|2756
8AGU|1|f|U|2757
8AGU|1|f|A|2758
8AGU|1|f|U|2759
8AGU|1|f|C|2760
8AGU|1|f|G|2761
8AGU|1|f|A|2762
8AGU|1|f|U|2763
8AGU|1|f|C|2764
8AGU|1|f|C|2765
*
8AGU|1|f|G|2793
8AGU|1|f|G|2794
8AGU|1|f|U|2795
8AGU|1|f|G|2796
8AGU|1|f|C|2797
8AGU|1|f|C|2798

Current chains

Chain f
25S rRNA

Nearby chains

Chain D
60S ribosomal protein L18-A
Chain G
60S ribosomal protein L21-A
Chain N
60S ribosomal protein L28
Chain b
60S ribosomal protein L42-A
Chain v
Eukaryotic translation initiation factor 5A-1

Coloring options:


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