J3_8AKN_018

3D structure

PDB id

8AKN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the terminating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

CGGAAG*CAG*CAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8AKN_018 not in the Motif Atlas

Homologous match to J3_5J7L_041

Geometric discrepancy: 0.0599

The information below is about J3_5J7L_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.6

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

8AKN|1|a|C|1298
8AKN|1|a|G|1299
8AKN|1|a|G|1300
8AKN|1|a|A|1301
8AKN|1|a|A|1302
8AKN|1|a|G|1303
*
8AKN|1|a|C|1625
8AKN|1|a|A|1626
8AKN|1|a|G|1627
*
8AKN|1|a|C|1639
8AKN|1|a|A|1640
8AKN|1|a|A|1641
8AKN|1|a|G|1642

Current chains

Chain a

23S ribosomal RNA

Nearby chains