3D structure

PDB id
8AM9 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the elongating ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
2.8 Å

Loop

Sequence
CUA*UAG*CAUAAG
Length
12 nucleotides
Bulged bases
8AM9|1|a|U|2334
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8AM9_022 not in the Motif Atlas
Homologous match to J3_5J7L_045
Geometric discrepancy: 0.1169
The information below is about J3_5J7L_045
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_61124.2
Basepair signature
cWW-tWH-tWW-cWW-F-cWW
Number of instances in this motif group
7

Unit IDs

8AM9|1|a|C|2295
8AM9|1|a|U|2296
8AM9|1|a|A|2297
*
8AM9|1|a|U|2321
8AM9|1|a|A|2322
8AM9|1|a|G|2323
*
8AM9|1|a|C|2332
8AM9|1|a|A|2333
8AM9|1|a|U|2334
8AM9|1|a|A|2335
8AM9|1|a|A|2336
8AM9|1|a|G|2337

Current chains

Chain a
23S ribosomal RNA

Nearby chains

Chain Y
Transfer RNA; tRNA
Chain b
5S ribosomal RNA; 5S rRNA
Chain f
50S ribosomal protein L5
Chain n
50S ribosomal protein L18
Chain v
50S ribosomal protein L27

Coloring options:


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