J3_8AP4_005

3D structure

PDB id

8AP4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Escherischia coli heat shock protein Hsp15 in complex with ribosomal 50S subunits bearing peptidyl-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGGAAG*CAG*CAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8AP4_005 not in the Motif Atlas

Homologous match to J3_5J7L_041

Geometric discrepancy: 0.1148

The information below is about J3_5J7L_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.6

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

8AP4|1|a|C|1298
8AP4|1|a|G|1299
8AP4|1|a|G|1300
8AP4|1|a|A|1301
8AP4|1|a|A|1302
8AP4|1|a|G|1303
*
8AP4|1|a|C|1625
8AP4|1|a|A|1626
8AP4|1|a|G|1627
*
8AP4|1|a|C|1639
8AP4|1|a|A|1640
8AP4|1|a|A|1641
8AP4|1|a|G|1642

Current chains

Chain a

23S rRNA

Nearby chains