J3_8AYE_019

3D structure

PDB id

8AYE (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome bound to thermorubin and fMet-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

1.96 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

8AYE|1|a|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8AYE_019 not in the Motif Atlas

Homologous match to J3_7A0S_007

Geometric discrepancy: 0.119

The information below is about J3_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_47341.1

Basepair signature

cWW-tHH-F-tHW-tHS-tWW-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

8AYE|1|a|C|1306
8AYE|1|a|A|1307
8AYE|1|a|A|1308
8AYE|1|a|G|1309
*
8AYE|1|a|C|1605
8AYE|1|a|C|1606
8AYE|1|a|C|1607
8AYE|1|a|A|1608
8AYE|1|a|A|1609
8AYE|1|a|A|1610
8AYE|1|a|C|1611
*
8AYE|1|a|G|1620
8AYE|1|a|U|1621
8AYE|1|a|G|1622

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L34