J3_8B2L_001
3D structure
- PDB id
- 8B2L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- CAGCCUUAGAA*UAG(PSU)CUGGAG*CUACG
- Length
- 26 nucleotides
- Bulged bases
- 8B2L|1|A3|A|118, 8B2L|1|A3|G|119, 8B2L|1|A3|G|154
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8B2L_001 not in the Motif Atlas
- Homologous match to J3_8C3A_001
- Geometric discrepancy: 0.4034
- The information below is about J3_8C3A_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_88489.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F-tWH-F-F-tHS-cWW-cWW-F-F
- Number of instances in this motif group
- 2
Unit IDs
8B2L|1|A3|C|111
8B2L|1|A3|A|112
8B2L|1|A3|G|113
8B2L|1|A3|C|114
8B2L|1|A3|C|115
8B2L|1|A3|U|116
8B2L|1|A3|U|117
8B2L|1|A3|A|118
8B2L|1|A3|G|119
8B2L|1|A3|A|120
8B2L|1|A3|A|121
*
8B2L|1|A3|U|147
8B2L|1|A3|A|148
8B2L|1|A3|G|149
8B2L|1|A3|PSU|150
8B2L|1|A3|C|151
8B2L|1|A3|U|152
8B2L|1|A3|G|153
8B2L|1|A3|G|154
8B2L|1|A3|A|155
8B2L|1|A3|G|156
*
8B2L|1|A3|C|260
8B2L|1|A3|U|261
8B2L|1|A3|A|262
8B2L|1|A3|C|263
8B2L|1|A3|G|264
Current chains
- Chain A3
- 25S rRNA
Nearby chains
- Chain D3
- 60S ribosomal protein L13
- Chain F3
- Ribosomal protein L15
- Chain U3
- eL36 (60S ribosomal protein L36)
- Chain c3
- 60S ribosomal protein L7a
- Chain n3
- 60S ribosomal protein L35-like
Coloring options: