J3_8B2L_011
3D structure
- PDB id
- 8B2L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- CUC*GAA*UAAAAG
- Length
- 12 nucleotides
- Bulged bases
- 8B2L|1|A3|A|2706
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8B2L_011 not in the Motif Atlas
- Homologous match to J3_8C3A_010
- Geometric discrepancy: 0.086
- The information below is about J3_8C3A_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_91491.5
- Basepair signature
- cWW-F-tWW-tHW-cWW-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
8B2L|1|A3|C|2667
8B2L|1|A3|U|2668
8B2L|1|A3|C|2669
*
8B2L|1|A3|G|2693
8B2L|1|A3|A|2694
8B2L|1|A3|A|2695
*
8B2L|1|A3|U|2704
8B2L|1|A3|A|2705
8B2L|1|A3|A|2706
8B2L|1|A3|A|2707
8B2L|1|A3|A|2708
8B2L|1|A3|G|2709
Current chains
- Chain A3
- 25S rRNA
Nearby chains
- Chain C3
- 5S ribosomal RNA; 5S rRNA
- Chain J3
- 60S ribosomal protein L21-1-like
- Chain h3
- 60S ribosomal protein L5-like
- Chain t3
- uL5 (60S ribosomal protein L11)
Coloring options: