J3_8B2L_016
3D structure
- PDB id
- 8B2L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- CCA*UUAUG*CAAAG
- Length
- 13 nucleotides
- Bulged bases
- 8B2L|1|h1|A|1096
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8B2L_016 not in the Motif Atlas
- Homologous match to J3_4V88_034
- Geometric discrepancy: 0.3447
- The information below is about J3_4V88_034
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_23622.1
- Basepair signature
- cWW-tWW-tWW-F-cWW-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
8B2L|1|h1|C|1040
8B2L|1|h1|C|1041
8B2L|1|h1|A|1042
*
8B2L|1|h1|U|1082
8B2L|1|h1|U|1083
8B2L|1|h1|A|1084
8B2L|1|h1|U|1085
8B2L|1|h1|G|1086
*
8B2L|1|h1|C|1093
8B2L|1|h1|A|1094
8B2L|1|h1|A|1095
8B2L|1|h1|A|1096
8B2L|1|h1|G|1097
Current chains
- Chain h1
- 18S rRNA
Nearby chains
- Chain G1
- 40S ribosomal protein S21
- Chain J1
- 40S ribosomal protein S26
- Chain K1
- 40S ribosomal protein S27
- Chain Z1
- 40S ribosomal protein SA
- Chain c1
- 40S ribosomal protein S2-3-like
- Chain e1
- 40S ribosomal protein S15a-1
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