J3_8B2L_017
3D structure
- PDB id
- 8B2L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- UGGA*UAC*GGAA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8B2L_017 not in the Motif Atlas
- Homologous match to J3_4V88_036
- Geometric discrepancy: 0.0937
- The information below is about J3_4V88_036
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_52655.2
- Basepair signature
- cWW-tSH-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
8B2L|1|h1|U|1171
8B2L|1|h1|G|1172
8B2L|1|h1|G|1173
8B2L|1|h1|A|1174
*
8B2L|1|h1|U|1473
8B2L|1|h1|A|1474
8B2L|1|h1|C|1475
*
8B2L|1|h1|G|1580
8B2L|1|h1|G|1581
8B2L|1|h1|A|1582
8B2L|1|h1|A|1583
Current chains
- Chain h1
- 18S rRNA
Nearby chains
- Chain E1
- 40S ribosomal protein S19-3
- Chain U1
- 40S ribosomal protein S18
- Chain W2
- Transfer RNA; tRNA
- Chain d1
- 40S ribosomal protein S5-like
- Chain f1
- 40S ribosomal protein S16
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