J3_8B2L_020
3D structure
- PDB id
- 8B2L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- UCUUAG*CGAGAC*GCAAUA
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8B2L_020 not in the Motif Atlas
- Geometric match to J3_4V88_039
- Geometric discrepancy: 0.3974
- The information below is about J3_4V88_039
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_47248.1
- Basepair signature
- cWW-F-F-F-F-F-tHH-F-cWW-cWW-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
8B2L|1|h1|U|1286
8B2L|1|h1|C|1287
8B2L|1|h1|U|1288
8B2L|1|h1|U|1289
8B2L|1|h1|A|1290
8B2L|1|h1|G|1291
*
8B2L|1|h1|C|1330
8B2L|1|h1|G|1331
8B2L|1|h1|A|1332
8B2L|1|h1|G|1333
8B2L|1|h1|A|1334
8B2L|1|h1|C|1335
*
8B2L|1|h1|G|1424
8B2L|1|h1|C|1425
8B2L|1|h1|A|1426
8B2L|1|h1|A|1427
8B2L|1|h1|U|1428
8B2L|1|h1|A|1429
Current chains
- Chain h1
- 18S rRNA
Nearby chains
- Chain D1
- 40S ribosomal protein S17-like
- Chain R1
- 40S ribosomal protein S20-2
- Chain V1
- 40S ribosomal protein S29
- Chain a1
- 40S ribosomal protein S3-2-like
- Chain c1
- 40S ribosomal protein S2-3-like
- Chain f1
- 40S ribosomal protein S16
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