J3_8B2L_021
3D structure
- PDB id
- 8B2L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- AGC*GGAC*GUUU
- Length
- 11 nucleotides
- Bulged bases
- 8B2L|1|h1|U|1418, 8B2L|1|h1|U|1419
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8B2L_021 not in the Motif Atlas
- Homologous match to J3_8C3A_043
- Geometric discrepancy: 0.1555
- The information below is about J3_8C3A_043
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_82365.3
- Basepair signature
- cWW-F-F-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
8B2L|1|h1|A|1339
8B2L|1|h1|G|1340
8B2L|1|h1|C|1341
*
8B2L|1|h1|G|1391
8B2L|1|h1|G|1392
8B2L|1|h1|A|1393
8B2L|1|h1|C|1394
*
8B2L|1|h1|G|1417
8B2L|1|h1|U|1418
8B2L|1|h1|U|1419
8B2L|1|h1|U|1420
Current chains
- Chain h1
- 18S rRNA
Nearby chains
- Chain D1
- 40S ribosomal protein S17-like
- Chain Q1
- guanine nucleotide-binding protein subunit beta-like protein
- Chain R1
- 40S ribosomal protein S20-2
- Chain V1
- 40S ribosomal protein S29
- Chain d1
- 40S ribosomal protein S5-like
- Chain f1
- 40S ribosomal protein S16
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