J3_8B2L_026
3D structure
- PDB id
- 8B2L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- AUG(A2M)AAAG*CU*AU
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8B2L_026 not in the Motif Atlas
- Geometric match to J3_5TBW_002
- Geometric discrepancy: 0.1164
- The information below is about J3_5TBW_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_69021.1
- Basepair signature
- cWW-tWH-cWW-tSH-F-cWW-F
- Number of instances in this motif group
- 7
Unit IDs
8B2L|1|A3|A|366
8B2L|1|A3|U|367
8B2L|1|A3|G|368
8B2L|1|A3|A2M|369
8B2L|1|A3|A|370
8B2L|1|A3|A|371
8B2L|1|A3|A|372
8B2L|1|A3|G|373
*
8B2L|1|A3|C|400
8B2L|1|A3|U|401
*
8B2L|1|B3|A|22
8B2L|1|B3|U|23
Current chains
- Chain A3
- 25S rRNA
- Chain B3
- 5.8S rRNA
Nearby chains
- Chain X3
- 60S ribosomal protein L39-3
- Chain m3
- uL24 (60S ribosomal protein L26)
- Chain s3
- uL4 (60S ribosomal protein L4)
Coloring options: