J3_8B2L_027
3D structure
- PDB id
- 8B2L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- AUG(A2M)AAAGGAC*GAGUCAAAGAGU(OMG)CU*AU
- Length
- 28 nucleotides
- Bulged bases
- 8B2L|1|A3|G|395, 8B2L|1|A3|OMG|399
- QA status
- Modified nucleotides: A2M, OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8B2L_027 not in the Motif Atlas
- Homologous match to J3_8C3A_049
- Geometric discrepancy: 0.2916
- The information below is about J3_8C3A_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_91149.1
- Basepair signature
- cWW-cWS-tSH-F-tWH-cSS-cWW-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-F-cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
8B2L|1|A3|A|366
8B2L|1|A3|U|367
8B2L|1|A3|G|368
8B2L|1|A3|A2M|369
8B2L|1|A3|A|370
8B2L|1|A3|A|371
8B2L|1|A3|A|372
8B2L|1|A3|G|373
8B2L|1|A3|G|374
8B2L|1|A3|A|375
8B2L|1|A3|C|376
*
8B2L|1|A3|G|387
8B2L|1|A3|A|388
8B2L|1|A3|G|389
8B2L|1|A3|U|390
8B2L|1|A3|C|391
8B2L|1|A3|A|392
8B2L|1|A3|A|393
8B2L|1|A3|A|394
8B2L|1|A3|G|395
8B2L|1|A3|A|396
8B2L|1|A3|G|397
8B2L|1|A3|U|398
8B2L|1|A3|OMG|399
8B2L|1|A3|C|400
8B2L|1|A3|U|401
*
8B2L|1|B3|A|22
8B2L|1|B3|U|23
Current chains
- Chain A3
- 25S rRNA
- Chain B3
- 5.8S rRNA
Nearby chains
- Chain X3
- 60S ribosomal protein L39-3
- Chain j3
- 50S ribosomal protein L22, chloroplastic
- Chain l3
- nascent chain
- Chain m3
- uL24 (60S ribosomal protein L26)
- Chain s3
- uL4 (60S ribosomal protein L4)
Coloring options: