J3_8B2L_030
3D structure
- PDB id
- 8B2L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- CGG*CGCAG*(PSU)CUG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8B2L_030 not in the Motif Atlas
- Homologous match to J3_8C3A_004
- Geometric discrepancy: 0.2435
- The information below is about J3_8C3A_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_44724.5
- Basepair signature
- cWW-tSH-F-cWW-tHS-cWW-F
- Number of instances in this motif group
- 6
Unit IDs
8B2L|1|A3|C|839
8B2L|1|A3|G|840
8B2L|1|A3|G|841
*
8B2L|1|A3|C|873
8B2L|1|A3|G|874
8B2L|1|A3|C|875
8B2L|1|A3|A|876
8B2L|1|A3|G|877
*
8B2L|1|A3|PSU|902
8B2L|1|A3|C|903
8B2L|1|A3|U|904
8B2L|1|A3|G|905
Current chains
- Chain A3
- 25S rRNA
Nearby chains
- Chain H3
- Ribosomal protein L19
- Chain T3
- 60S ribosomal protein L34
- Chain a3
- 60S ribosomal protein L37a
- Chain o3
- uL2 (60S ribosomal protein L8)
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