J3_8B2L_035

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

AGACG*CC*GAAAAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8B2L_035 not in the Motif Atlas

Homologous match to J3_8P9A_058

Geometric discrepancy: 0.0867

The information below is about J3_8P9A_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_08594.2

Basepair signature

cWW-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

7

Unit IDs

8B2L|1|A3|A|1658
8B2L|1|A3|G|1659
8B2L|1|A3|A|1660
8B2L|1|A3|C|1661
8B2L|1|A3|G|1662
*
8B2L|1|A3|C|1797
8B2L|1|A3|C|1798
*
8B2L|1|A3|G|1802
8B2L|1|A3|A|1803
8B2L|1|A3|A|1804
8B2L|1|A3|A|1805
8B2L|1|A3|A|1806
8B2L|1|A3|U|1807

Current chains

Chain A3

25S rRNA

Nearby chains

Chain T3

60S ribosomal protein L34

Chain a3

60S ribosomal protein L37a

Chain o3

uL2 (60S ribosomal protein L8)